stable
Installation
Examples
Datasets
Registration
Slide I/O
Image pre-processing
Feature detectors and descriptors
Feature matching
Affine optimization
Micro-rigid registration
Non-rigid registration
Serial rigid registration
Serial non-rigid registration
Visualization
Change Log
valis
Index
Edit on GitHub
Index
_
|
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
J
|
K
|
L
|
M
|
N
|
O
|
P
|
Q
|
R
|
S
|
T
|
U
|
V
|
W
|
X
|
Z
_
__init__() (valis.affine_optimizer.AffineOptimizer method)
(valis.affine_optimizer.AffineOptimizerMattesMI method)
(valis.feature_detectors.FeatureDD method)
(valis.feature_matcher.Matcher method)
(valis.feature_matcher.MatchInfo method)
(valis.feature_matcher.SuperGlueMatcher method)
(valis.feature_matcher.SuperPointAndGlue method)
(valis.micro_rigid_registrar.MicroRigidRegistrar method)
(valis.non_rigid_registrars.NonRigidRegistrar method)
(valis.non_rigid_registrars.NonRigidRegistrarGroupwise method)
(valis.non_rigid_registrars.NonRigidRegistrarXY method)
(valis.non_rigid_registrars.OpticalFlowWarper method)
(valis.non_rigid_registrars.SimpleElastixGroupwiseWarper method)
(valis.non_rigid_registrars.SimpleElastixWarper method)
(valis.preprocessing.BgColorDistance method)
(valis.preprocessing.ChannelGetter method)
(valis.preprocessing.ColorfulStandardizer method)
(valis.preprocessing.HEDeconvolution method)
(valis.preprocessing.ImageProcesser method)
(valis.preprocessing.Luminosity method)
(valis.preprocessing.StainFlattener method)
(valis.registration.Slide method)
(valis.registration.Valis method)
(valis.serial_non_rigid.NonRigidZImage method)
(valis.serial_non_rigid.SerialNonRigidRegistrar method)
(valis.serial_rigid.SerialRigidRegistrar method)
(valis.serial_rigid.ZImage method)
(valis.slide_io.MetaData method)
(valis.slide_io.SlideReader method)
_bk_dxdy_f (valis.registration.Slide attribute)
_bk_dxdy_np (valis.registration.Slide attribute)
_dup_names_dict (valis.registration.Valis attribute)
_empty_slides (valis.registration.Valis attribute)
_full_displacement_shape_rc (valis.registration.Valis attribute)
_fwd_dxdy_f (valis.registration.Slide attribute)
_fwd_dxdy_np (valis.registration.Slide attribute)
_non_rigid_bbox (valis.registration.Valis attribute)
A
accepts_xy (valis.affine_optimizer.AffineOptimizer attribute)
AffineOptimizer (class in valis.affine_optimizer)
AffineOptimizerMattesMI (class in valis.affine_optimizer)
AkazeFD (class in valis.feature_detectors)
aleady_sorted (valis.serial_rigid.SerialRigidRegistrar attribute)
align() (valis.affine_optimizer.AffineOptimizer method)
,
[1]
(valis.affine_optimizer.AffineOptimizerMattesMI method)
,
[1]
align_to_reference (valis.registration.Valis attribute)
(valis.serial_rigid.SerialRigidRegistrar attribute)
aligned_img_shape_rc (valis.registration.Valis attribute)
aligned_slide_shape_rc (valis.registration.Slide attribute)
(valis.registration.Valis attribute)
B
backward_dx (valis.non_rigid_registrars.NonRigidRegistrar attribute)
(valis.non_rigid_registrars.NonRigidRegistrarGroupwise attribute)
(valis.non_rigid_registrars.NonRigidRegistrarXY attribute)
(valis.non_rigid_registrars.SimpleElastixGroupwiseWarper attribute)
backward_dy (valis.non_rigid_registrars.NonRigidRegistrar attribute)
(valis.non_rigid_registrars.NonRigidRegistrarGroupwise attribute)
(valis.non_rigid_registrars.NonRigidRegistrarXY attribute)
(valis.non_rigid_registrars.SimpleElastixGroupwiseWarper attribute)
bf_datatype (valis.slide_io.MetaData attribute)
bg_color (valis.registration.Slide attribute)
bg_px_pos_rc (valis.registration.Slide attribute)
BgColorDistance (class in valis.preprocessing)
BioFormatsSlideReader (class in valis.slide_io)
bk_dxdy (valis.registration.Slide attribute)
(valis.serial_non_rigid.NonRigidZImage attribute)
BoostFD (class in valis.feature_detectors)
brightfield_procsseing_fxn_str (valis.registration.Valis attribute)
BriskFD (class in valis.feature_detectors)
C
calc() (valis.non_rigid_registrars.NonRigidRegistrar method)
(valis.non_rigid_registrars.NonRigidRegistrarXY method)
(valis.non_rigid_registrars.OpticalFlowWarper method)
(valis.non_rigid_registrars.SimpleElastixGroupwiseWarper method)
(valis.non_rigid_registrars.SimpleElastixWarper method)
calc_cost() (valis.affine_optimizer.AffineOptimizerMattesMI method)
cam16ucs_cmap() (in module valis.viz)
channel_names (valis.slide_io.MetaData attribute)
ChannelGetter (class in valis.preprocessing)
color_displacement_grid() (in module valis.viz)
color_displacement_tri_grid() (in module valis.viz)
color_dxdy() (in module valis.viz)
color_multichannel() (in module valis.viz)
ColorfulStandardizer (class in valis.preprocessing)
convert_to_ome_tiff() (in module valis.slide_io)
cost_fxn() (valis.affine_optimizer.AffineOptimizer method)
create_metadata() (valis.slide_io.BioFormatsSlideReader method)
(valis.slide_io.FlattenedPyramidReader method)
(valis.slide_io.ImageReader method)
(valis.slide_io.SlideReader method)
(valis.slide_io.VipsSlideReader method)
create_ome_xml() (in module valis.slide_io)
create_tissue_mask_from_multichannel() (in module valis.preprocessing)
create_tissue_mask_from_rgb() (in module valis.preprocessing)
crop (valis.registration.Slide attribute)
(valis.registration.Valis attribute)
crop_T (valis.serial_rigid.ZImage attribute)
current_level (valis.affine_optimizer.AffineOptimizer attribute)
D
DaisyFD (class in valis.feature_detectors)
deformation_field_img (valis.non_rigid_registrars.NonRigidRegistrar attribute)
(valis.non_rigid_registrars.NonRigidRegistrarGroupwise attribute)
(valis.non_rigid_registrars.NonRigidRegistrarXY attribute)
(valis.non_rigid_registrars.SimpleElastixGroupwiseWarper attribute)
desc (valis.serial_rigid.ZImage attribute)
detect_and_compute() (valis.feature_detectors.FeatureDD method)
detectAndCompute() (valis.feature_detectors.FeatureDD method)
distance_mat (valis.serial_rigid.SerialRigidRegistrar attribute)
distance_metric_name (valis.serial_rigid.SerialRigidRegistrar attribute)
distance_metric_type (valis.serial_rigid.SerialRigidRegistrar attribute)
draw_features() (in module valis.viz)
draw_matches() (in module valis.viz)
dst_dir (valis.registration.Valis attribute)
E
end_non_rigid_time (valis.registration.Valis attribute)
end_rigid_time (valis.registration.Valis attribute)
F
feature_descriptor_str (valis.registration.Valis attribute)
feature_detector_cls (valis.micro_rigid_registrar.MicroRigidRegistrar attribute)
feature_detector_str (valis.registration.Valis attribute)
FeatureDD (class in valis.feature_detectors)
features (valis.serial_rigid.SerialRigidRegistrar attribute)
filter_features() (in module valis.feature_detectors)
filter_matches() (in module valis.feature_matcher)
fixed_img (valis.non_rigid_registrars.NonRigidRegistrar attribute)
(valis.non_rigid_registrars.NonRigidRegistrarXY attribute)
fixed_kp_fname (valis.affine_optimizer.AffineOptimizerMattesMI attribute)
fixed_obj (valis.serial_rigid.ZImage attribute)
fixed_slide (valis.registration.Slide attribute)
fixed_xy (valis.non_rigid_registrars.NonRigidRegistrarXY attribute)
(valis.serial_non_rigid.NonRigidZImage attribute)
FlattenedPyramidReader (class in valis.slide_io)
from_rigid_reg (valis.serial_non_rigid.SerialNonRigidRegistrar attribute)
full_img_f (valis.serial_rigid.ZImage attribute)
fwd_dxdy (valis.registration.Slide attribute)
(valis.serial_non_rigid.NonRigidZImage attribute)
G
get_channel() (valis.slide_io.BioFormatsSlideReader method)
(valis.slide_io.FlattenedPyramidReader method)
(valis.slide_io.ImageReader method)
(valis.slide_io.VipsSlideReader method)
get_default_params() (valis.non_rigid_registrars.SimpleElastixGroupwiseWarper static method)
(valis.non_rigid_registrars.SimpleElastixWarper static method)
get_luminosity() (in module valis.preprocessing)
get_n_colors() (in module valis.viz)
get_slide() (valis.registration.Valis method)
get_slide_reader() (in module valis.slide_io)
get_tiles_parallel() (valis.slide_io.BioFormatsSlideReader method)
gms_threshold (valis.feature_matcher.Matcher attribute)
grid_spacing (valis.non_rigid_registrars.NonRigidRegistrar attribute)
(valis.non_rigid_registrars.NonRigidRegistrarGroupwise attribute)
(valis.non_rigid_registrars.NonRigidRegistrarXY attribute)
(valis.non_rigid_registrars.SimpleElastixGroupwiseWarper attribute)
H
has_rounds (valis.registration.Valis attribute)
HEDeconvolution (class in valis.preprocessing)
I
if_procsseing_fxn_str (valis.registration.Valis attribute)
image (valis.preprocessing.ImageProcesser attribute)
(valis.registration.Slide attribute)
(valis.serial_non_rigid.NonRigidZImage attribute)
(valis.serial_rigid.ZImage attribute)
image_type (valis.registration.Valis attribute)
ImageProcesser (class in valis.preprocessing)
ImageReader (class in valis.slide_io)
img_dir (valis.serial_rigid.SerialRigidRegistrar attribute)
img_file_list (valis.serial_rigid.SerialRigidRegistrar attribute)
img_id (valis.serial_rigid.ZImage attribute)
img_list (valis.non_rigid_registrars.NonRigidRegistrarGroupwise attribute)
(valis.non_rigid_registrars.SimpleElastixGroupwiseWarper attribute)
img_obj_dict (valis.serial_rigid.SerialRigidRegistrar attribute)
img_obj_list (valis.serial_rigid.SerialRigidRegistrar attribute)
img_type (valis.registration.Slide attribute)
init_jvm() (in module valis.registration)
(in module valis.slide_io)
is_empty (valis.registration.Slide attribute)
is_ome (valis.slide_io.VipsSlideReader attribute)
is_rgb (valis.registration.Slide attribute)
(valis.slide_io.MetaData attribute)
iter_order (valis.micro_rigid_registrar.MicroRigidRegistrar attribute)
(valis.serial_rigid.SerialRigidRegistrar attribute)
J
jzazbz_cmap() (in module valis.viz)
K
KazeFD (class in valis.feature_detectors)
kill_jvm() (in module valis.registration)
(in module valis.slide_io)
kp_descriptor (valis.feature_detectors.FeatureDD attribute)
,
[1]
kp_detector (valis.feature_detectors.FeatureDD attribute)
kp_detector_name (valis.feature_detectors.FeatureDD attribute)
kp_pos_xy (valis.serial_rigid.ZImage attribute)
L
LatchFD (class in valis.feature_detectors)
level (valis.preprocessing.ImageProcesser attribute)
load_registrar() (in module valis.registration)
Luminosity (class in valis.preprocessing)
M
M (valis.registration.Slide attribute)
(valis.serial_rigid.ZImage attribute)
M_inv (valis.serial_rigid.ZImage attribute)
mask (valis.non_rigid_registrars.NonRigidRegistrar attribute)
(valis.non_rigid_registrars.NonRigidRegistrarGroupwise attribute)
(valis.non_rigid_registrars.NonRigidRegistrarXY attribute)
(valis.non_rigid_registrars.SimpleElastixGroupwiseWarper attribute)
(valis.serial_non_rigid.SerialNonRigidRegistrar attribute)
mask_bbox_xywh (valis.serial_non_rigid.SerialNonRigidRegistrar attribute)
match_desc_and_kp() (in module valis.feature_matcher)
match_dict (valis.serial_rigid.ZImage attribute)
match_filter_method (valis.feature_matcher.Matcher attribute)
(valis.registration.Valis attribute)
match_histograms() (in module valis.preprocessing)
,
[1]
match_images() (valis.feature_matcher.Matcher method)
(valis.feature_matcher.SuperGlueMatcher method)
(valis.feature_matcher.SuperPointAndGlue method)
Matcher (class in valis.feature_matcher)
matcher (valis.micro_rigid_registrar.MicroRigidRegistrar attribute)
MatchInfo (class in valis.feature_matcher)
max_image_dim_px (valis.registration.Valis attribute)
max_processed_image_dim_px (valis.registration.Valis attribute)
MetaData (class in valis.slide_io)
metadata (valis.slide_io.SlideReader attribute)
method (valis.non_rigid_registrars.NonRigidRegistrar attribute)
(valis.non_rigid_registrars.NonRigidRegistrarGroupwise attribute)
(valis.non_rigid_registrars.NonRigidRegistrarXY attribute)
(valis.non_rigid_registrars.SimpleElastixGroupwiseWarper attribute)
metric (valis.feature_matcher.Matcher attribute)
metric_kwargs (valis.feature_matcher.Matcher attribute)
metric_name (valis.feature_matcher.Matcher attribute)
metric_type (valis.feature_matcher.Matcher attribute)
MicroRigidRegistrar (class in valis.micro_rigid_registrar)
module
valis.feature_detectors
valis.feature_matcher
valis.non_rigid_registrars
valis.preprocessing
valis.registration
valis.serial_non_rigid
valis.serial_rigid
valis.slide_io
valis.viz
moving_img (valis.non_rigid_registrars.NonRigidRegistrar attribute)
(valis.non_rigid_registrars.NonRigidRegistrarXY attribute)
moving_kp_fname (valis.affine_optimizer.AffineOptimizerMattesMI attribute)
moving_xy (valis.non_rigid_registrars.NonRigidRegistrarXY attribute)
(valis.serial_non_rigid.NonRigidZImage attribute)
N
n_channels (valis.slide_io.MetaData attribute)
name (valis.registration.Slide attribute)
(valis.registration.Valis attribute)
(valis.serial_non_rigid.NonRigidZImage attribute)
(valis.serial_non_rigid.SerialNonRigidRegistrar attribute)
(valis.serial_rigid.SerialRigidRegistrar attribute)
(valis.serial_rigid.ZImage attribute)
(valis.slide_io.MetaData attribute)
name_dict (valis.registration.Valis attribute)
nbins (valis.affine_optimizer.AffineOptimizer attribute)
(valis.affine_optimizer.AffineOptimizerMattesMI attribute)
nlevels (valis.affine_optimizer.AffineOptimizer attribute)
(valis.affine_optimizer.AffineOptimizerMattesMI attribute)
non_rigid_obj_dict (valis.serial_non_rigid.SerialNonRigidRegistrar attribute)
non_rigid_overlap_img (valis.registration.Valis attribute)
non_rigid_reg_class_str (valis.registration.Valis attribute)
non_rigid_reg_img_f (valis.registration.Slide attribute)
non_rigid_reg_kwargs (valis.registration.Valis attribute)
non_rigid_reg_mask (valis.registration.Slide attribute)
non_rigid_reg_params (valis.serial_non_rigid.SerialNonRigidRegistrar attribute)
non_rigid_registrar (valis.registration.Valis attribute)
non_rigid_registrar_cls (valis.registration.Valis attribute)
NonRigidRegistrar (class in valis.non_rigid_registrars)
NonRigidRegistrarGroupwise (class in valis.non_rigid_registrars)
NonRigidRegistrarXY (class in valis.non_rigid_registrars)
NonRigidZImage (class in valis.serial_non_rigid)
norm_img_stats() (in module valis.preprocessing)
,
[1]
norm_method (valis.registration.Valis attribute)
O
OpticalFlowWarper (class in valis.non_rigid_registrars)
optimal_M (valis.serial_rigid.ZImage attribute)
optimal_tile_wh (valis.slide_io.MetaData attribute)
optimal_Z (valis.serial_rigid.SerialRigidRegistrar attribute)
optimization (valis.affine_optimizer.AffineOptimizer attribute)
OrbVggFD (class in valis.feature_detectors)
original_img_list (valis.registration.Valis attribute)
original_overlap_img (valis.registration.Valis attribute)
original_xml (valis.registration.Slide attribute)
(valis.slide_io.MetaData attribute)
P
padded_shape_rc (valis.serial_rigid.ZImage attribute)
pixel_physical_size_xyu (valis.slide_io.MetaData attribute)
process_image() (valis.preprocessing.BgColorDistance method)
(valis.preprocessing.ChannelGetter method)
(valis.preprocessing.ColorfulStandardizer method)
(valis.preprocessing.HEDeconvolution method)
(valis.preprocessing.ImageProcesser method)
(valis.preprocessing.Luminosity method)
(valis.preprocessing.StainFlattener method)
processed_img (valis.registration.Slide attribute)
processed_img_f (valis.registration.Slide attribute)
processed_img_shape_rc (valis.registration.Slide attribute)
Q
qt_emitter (valis.registration.Valis attribute)
R
ransac (valis.feature_matcher.Matcher attribute)
reader (valis.registration.Slide attribute)
ref_image_name (valis.serial_non_rigid.SerialNonRigidRegistrar attribute)
reference_img_f (valis.registration.Valis attribute)
(valis.serial_rigid.SerialRigidRegistrar attribute)
reference_img_idx (valis.registration.Valis attribute)
(valis.serial_rigid.SerialRigidRegistrar attribute)
reflection_M (valis.serial_rigid.ZImage attribute)
Reg (valis.affine_optimizer.AffineOptimizerMattesMI attribute)
reg_img_shape_rc (valis.registration.Slide attribute)
register() (valis.micro_rigid_registrar.MicroRigidRegistrar method)
(valis.non_rigid_registrars.NonRigidRegistrar method)
(valis.non_rigid_registrars.NonRigidRegistrarGroupwise method)
(valis.non_rigid_registrars.NonRigidRegistrarXY method)
(valis.registration.Valis method)
(valis.serial_non_rigid.SerialNonRigidRegistrar method)
register_images() (in module valis.serial_non_rigid)
(in module valis.serial_rigid)
registered_img (valis.serial_rigid.ZImage attribute)
resolution (valis.registration.Slide attribute)
resolution_xyu (valis.registration.Valis attribute)
rigid_overlap_img (valis.registration.Valis attribute)
rigid_reg_img_f (valis.registration.Slide attribute)
rigid_reg_kwargs (valis.registration.Valis attribute)
rigid_reg_mask (valis.registration.Slide attribute)
rigid_registrar (valis.registration.Valis attribute)
roi (valis.micro_rigid_registrar.MicroRigidRegistrar attribute)
S
save_ome_tiff() (in module valis.slide_io)
scale (valis.micro_rigid_registrar.MicroRigidRegistrar attribute)
scale_physical_size() (valis.slide_io.BioFormatsSlideReader method)
(valis.slide_io.FlattenedPyramidReader method)
(valis.slide_io.ImageReader method)
(valis.slide_io.VipsSlideReader method)
scaling (valis.feature_matcher.Matcher attribute)
SerialNonRigidRegistrar (class in valis.serial_non_rigid)
SerialRigidRegistrar (class in valis.serial_rigid)
series (valis.preprocessing.ImageProcesser attribute)
(valis.registration.Slide attribute)
(valis.registration.Valis attribute)
(valis.slide_io.BioFormatsSlideReader property)
(valis.slide_io.MetaData attribute)
(valis.slide_io.SlideReader attribute)
server (valis.slide_io.MetaData attribute)
setup() (valis.affine_optimizer.AffineOptimizer method)
(valis.affine_optimizer.AffineOptimizerMattesMI method)
shape (valis.non_rigid_registrars.NonRigidRegistrar attribute)
(valis.non_rigid_registrars.NonRigidRegistrarGroupwise attribute)
(valis.non_rigid_registrars.NonRigidRegistrarXY attribute)
(valis.non_rigid_registrars.SimpleElastixGroupwiseWarper attribute)
(valis.serial_non_rigid.SerialNonRigidRegistrar attribute)
similarity_mat (valis.serial_rigid.SerialRigidRegistrar attribute)
similarity_metric (valis.registration.Valis attribute)
SimpleElastixGroupwiseWarper (class in valis.non_rigid_registrars)
SimpleElastixWarper (class in valis.non_rigid_registrars)
size (valis.non_rigid_registrars.NonRigidRegistrarGroupwise attribute)
(valis.registration.Valis attribute)
(valis.serial_non_rigid.SerialNonRigidRegistrar attribute)
(valis.serial_rigid.SerialRigidRegistrar attribute)
Slide (class in valis.registration)
slide2image() (valis.registration.Slide method)
(valis.slide_io.BioFormatsSlideReader method)
(valis.slide_io.FlattenedPyramidReader method)
(valis.slide_io.ImageReader method)
(valis.slide_io.SlideReader method)
(valis.slide_io.VipsSlideReader method)
slide2vips() (valis.registration.Slide method)
(valis.slide_io.BioFormatsSlideReader method)
(valis.slide_io.FlattenedPyramidReader method)
(valis.slide_io.ImageReader method)
(valis.slide_io.SlideReader method)
(valis.slide_io.VipsSlideReader method)
slide_dict (valis.registration.Valis attribute)
slide_dimensions (valis.slide_io.MetaData attribute)
slide_dimensions_wh (valis.registration.Slide attribute)
slide_dims_dict_wh (valis.registration.Valis attribute)
slide_f (valis.slide_io.SlideReader attribute)
slide_shape_rc (valis.registration.Slide attribute)
SlideReader (class in valis.slide_io)
src_dir (valis.registration.Valis attribute)
src_f (valis.preprocessing.ImageProcesser attribute)
(valis.registration.Slide attribute)
stack_idx (valis.registration.Slide attribute)
(valis.serial_non_rigid.NonRigidZImage attribute)
(valis.serial_rigid.ZImage attribute)
StainFlattener (class in valis.preprocessing)
standardize_colorfulness() (in module valis.preprocessing)
start_time (valis.registration.Valis attribute)
stored_dxdy (valis.registration.Slide attribute)
summarize() (valis.serial_non_rigid.SerialNonRigidRegistrar method)
(valis.serial_rigid.SerialRigidRegistrar method)
summary (valis.serial_non_rigid.SerialNonRigidRegistrar attribute)
summary_df (valis.registration.Valis attribute)
(valis.serial_rigid.SerialRigidRegistrar attribute)
SuperGlueMatcher (class in valis.feature_matcher)
SuperPointAndGlue (class in valis.feature_matcher)
SuperPointFD (class in valis.feature_detectors)
T
T (valis.serial_rigid.ZImage attribute)
target_processing_stats (valis.registration.Valis attribute)
thumbnail_size (valis.registration.Valis attribute)
tile_wh (valis.micro_rigid_registrar.MicroRigidRegistrar attribute)
to_prev_A (valis.serial_rigid.ZImage attribute)
transform_str (valis.registration.Valis attribute)
transform_type (valis.serial_rigid.SerialRigidRegistrar attribute)
transformation (valis.affine_optimizer.AffineOptimizer attribute)
(valis.affine_optimizer.AffineOptimizerMattesMI attribute)
turbo_cmap() (in module valis.viz)
U
unfiltered_match_dict (valis.serial_rigid.ZImage attribute)
units (valis.registration.Slide attribute)
unsorted_distance_mat (valis.serial_rigid.SerialRigidRegistrar attribute)
unsorted_similarity_mat (valis.serial_rigid.SerialRigidRegistrar attribute)
update_xml_for_new_img() (in module valis.slide_io)
use_openslide (valis.slide_io.VipsSlideReader attribute)
V
val_obj (valis.micro_rigid_registrar.MicroRigidRegistrar attribute)
(valis.registration.Slide attribute)
Valis (class in valis.registration)
valis.feature_detectors
module
valis.feature_matcher
module
valis.non_rigid_registrars
module
valis.preprocessing
module
valis.registration
module
valis.serial_non_rigid
module
valis.serial_rigid
module
valis.slide_io
module
valis.viz
module
VggFD (class in valis.feature_detectors)
VipsSlideReader (class in valis.slide_io)
W
warp_and_merge_slides() (valis.registration.Valis method)
warp_and_save_slide() (valis.registration.Slide method)
warp_geojson() (valis.registration.Slide method)
warp_geojson_from_to() (valis.registration.Slide method)
warp_img() (valis.registration.Slide method)
warp_slide() (valis.registration.Slide method)
warp_xy() (valis.registration.Slide method)
warp_xy_from_to() (valis.registration.Slide method)
warped_grid (valis.serial_non_rigid.NonRigidZImage attribute)
warped_image (valis.non_rigid_registrars.NonRigidRegistrar attribute)
(valis.non_rigid_registrars.NonRigidRegistrarGroupwise attribute)
(valis.non_rigid_registrars.NonRigidRegistrarXY attribute)
(valis.non_rigid_registrars.SimpleElastixGroupwiseWarper attribute)
write_elastix_kp() (valis.affine_optimizer.AffineOptimizerMattesMI method)
X
xy_in_prev (valis.registration.Slide attribute)
xy_in_prev_in_bbox (valis.registration.Slide attribute)
xy_matched_to_prev (valis.registration.Slide attribute)
xy_matched_to_prev_in_bbox (valis.registration.Slide attribute)
Z
ZImage (class in valis.serial_rigid)
Read the Docs
v: stable
Versions
latest
stable
Downloads
pdf
epub
On Read the Docs
Project Home
Builds